There are (probably multiple) existing threads about why different programs calculate disk space (free space, used space) differently, and what they actually mean by the produced value. Take a look at them. Have you tried what
or perhaps just
says, does it make sense (note: running that for your whole disk does take quite a lot of time)?
You seem to use quite a lot of space if you haven't installed "much" over the regular installation.. Note that many things affect what your disk's size is or seems to be, and how much space files take (partition sizes, filesystem etc. may cause small changes to how much space a file actually takes on the disk, the value may not be exactly the file size). But like I said, search and read the other threads, there's been discussion about these things. My advice is to have a big enough harddisk so you don't have to worry about these things; nowadays a several hundred gigabytes disk isn't
that expensive after all.